L.C.), 15 monica.gotta@unige.ch (M.G.) 16 17 18
RESULTS
76UBAP2L localizes inside stress granules in discrete particles distinct from G3BP1 77 cores. 78 Given the importance of UBAP2L in sodium arsenite (arsenite hereafter)-induced stress 79 granule assembly (Markmiller et al., 2018; Youn et al., 2018), we sought to investigate its 80 sublocalization inside stress granules. To this end, we used 3D-STED (3D Stimulated 81 Emission Depletion miscroscopy, Hell and Wichmann, 1994; Klar and Hell, 1999). 3D-STED 82 immunofluorescence of HeLa K cells fixed and stained with anti-UBAP2L antibodies, 83 revealed that each stress granule is formed by discrete UBAP2L particles of roughly round 84 shape ( Fig. 1 A), with a diameter of 187.0 ± 44.2 nm (mean ± SD, Fig. 1 B). We also 85 performed 3D-STED on HeLa K cells stained for the known stress granule component 86 G3BP1 and measured the diameter of G3BP1 cores ( Fig. 1 A). Our analysis revealed a 87 diameter of 182.7 ± 41.9 nm (mean ± SD), which is in good agreement with the published 88 diameter of 190.8 ± 28.3 nm (Fig. 1B, Jain et al., 2016). The number of UBAP2L and G3BP1 89 particles linearly correlated with the stress granule volume ( Fig. S1 A). The localization of 90 UBAP2L in discrete particles and their size distribution suggest that UBAP2L localizes to 91 stress granule cores.
92The shell and the core of stress granules do not only differ in their composition, but also in 93 the dynamics of their components, with core proteins being more stable and shell proteins 94 more dynamic. To assess whether UBAP2L particles are stress granule cores, we measured 95 the dynamics of UBAP2L in living cells. To visualize UBAP2L, we tagged endogenous 96 UBAP2L at the C-terminus with the red fluorescent protein mScarlet using CRISPR-Cas9 97 (Fig. S1 B Bindels et al., 2017). Clones were screened via PCR (Polymerase Chain 98 Reaction, Fig. S1 C) and validated with western blot using an anti-UBAP2L antibody (Fig. 99 S1 D). In addition, treatment of UBAP2L-mScarlet HeLa cells with a siRNA directed against 100 mScarlet, followed by western blot analysis, confirmed the successful insertion of the 101 construct (Fig. S1 E). Although we failed to identify a homozygous insertion (Fig. S1 D, E), 102 live cell imaging revealed that UBAP2L-mScarlet transitions from a diffuse cytosolic signal 103 to a droplet-like pattern following arsenite exposure (Fig. S1 F). This observation is 104 consistent with published immunofluorescence of UBAP2L (Markmiller et al., 2018; Youn et 105 al., 2018), indicating that UBAP2L-mScarlet recapitulates the localization of wild-type 106 UBAP2L. Having created a tool to visualize UBAP2L in vivo, we next measured the 107 dynamics of UBAP2L in stress granules using Fluorescence Recovery after Photobleaching 108 (FRAP). After treating UBAP2L-mScarlet HeLa cells with arsenite to induce stress granule 109 6 formation, we bleached a single cytosolic granule and followed the fluorescence recovery 110 over time using confocal microscopy (Fig. 1 C). Analysis of fluo...