Draft Genome Sequence of
            <i>Cyanobacterium</i>
            sp. Strain IPPAS B-1200 with a Unique Fatty Acid Composition

Starikov, A. Yu.; Usserbaeva, Aizhan A.; Sinetova, Maria A.; Sarsekeyeva, Fariza K.; Zayadan, B. K.; Ustinova, Vera V.; Kupriyanova, Elena V.; Los, Dmitry A.; Mironov, Kirill S.

doi:10.1128/genomea.01306-16

Cited by 7 publications

(6 citation statements)

References 7 publications

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“…A unicellular alkaliphilic cyanobacterium with a wide temperature optimum (24-34 • C); contains many short saturated and monounsaturated C14 and C16 FAs, which can be used for biofuels [176]; draft genome sequenced [205]; possesses a unique desaturase, DesC, that nonspecifically introduces double bonds in C14, C16, and C18 FAs [206].…”

Section: /2013mentioning

confidence: 99%

“…The draft genomes of five cyanobacterial strains from the collection were sequenced and analyzed [ 205 , 208 , 213 , 214 ]. Information on the FA composition and the set of desaturases revealed from genomic data was further used to develop the biochemical classification system for cyanobacteria [ 215 ].…”

Section: Culture Collection Of Microalgae and Cyanobacteria Ippas At ...mentioning

confidence: 99%

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Plants, Cells, Algae, and Cyanobacteria In Vitro and Cryobank Collections at the Institute of Plant Physiology, Russian Academy of Sciences—A Platform for Research and Production Center

Yuorieva,

Sinetova,

Messineva

et al. 2023

Biology

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Ex situ collections of algae, cyanobacteria, and plant materials (cell cultures, hairy and adventitious root cultures, shoots, etc.) maintained in vitro or in liquid nitrogen (−196 °C, LN) are valuable sources of strains with unique ecological and biotechnological traits. Such collections play a vital role in bioresource conservation, science, and industry development but are rarely covered in publications. Here, we provide an overview of five genetic collections maintained at the Institute of Plant Physiology of the Russian Academy of Sciences (IPPRAS) since the 1950–1970s using in vitro and cryopreservation approaches. These collections represent different levels of plant organization, from individual cells (cell culture collection) to organs (hairy and adventitious root cultures, shoot apices) to in vitro plants. The total collection holdings comprise more than 430 strains of algae and cyanobacteria, over 200 potato clones, 117 cell cultures, and 50 strains of hairy and adventitious root cultures of medicinal and model plant species. The IPPRAS plant cryobank preserves in LN over 1000 specimens of in vitro cultures and seeds of wild and cultivated plants belonging to 457 species and 74 families. Several algae and plant cell culture strains have been adapted for cultivation in bioreactors from laboratory (5–20-L) to pilot (75-L) to semi-industrial (150–630-L) scale for the production of biomass with high nutritive or pharmacological value. Some of the strains with proven biological activities are currently used to produce cosmetics and food supplements. Here, we provide an overview of the current collections’ composition and major activities, their use in research, biotechnology, and commercial application. We also highlight the most interesting studies performed with collection strains and discuss strategies for the collections’ future development and exploitation in view of current trends in biotechnology and genetic resources conservation.

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Section: /2013mentioning

confidence: 99%

Section: Culture Collection Of Microalgae and Cyanobacteria Ippas At ...mentioning

confidence: 99%

Plants, Cells, Algae, and Cyanobacteria In Vitro and Cryobank Collections at the Institute of Plant Physiology, Russian Academy of Sciences—A Platform for Research and Production Center

Yuorieva,

Sinetova,

Messineva

et al. 2023

Biology

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“…As it is difficult to find an alternative second culture collection willing to accept a new deposit and ensure the availability of subcultures worldwide, as required for validation of the name under the ICNP, we have preserved a subculture of strain PCC 7202, as described in Methods, enabling the valid publication of the names Cyanobacterium and Cyanobacterium stanieri under Cyanobacterium sp. strain IPPAS B-1200 Salt Lake Balkhash, Kazakhstan Genome: LWHC00000000 KM502966; species 5.1.7.6B, unnamed [42,43] Uncultured bacterium clone SINH445…”

Section: Descriptions Of Cyanobacterium Rippka and Cohen-bazire Gen N...mentioning

confidence: 99%

Validation of the names Cyanobacterium and Cyanobacterium stanieri, and proposal of Cyanobacteriota phyl. nov.

Oren

Mareš

Rippka

2022

International Journal of Systematic and Evolutionary Microbiology

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The decision by the International Committee on Systematics of Prokaryotes (ICSP) to place the rank of phylum under the rules of the International Code of Nomenclature of Prokaryotes (ICNP), with phylum names ending in –ota based on the name of a type genus, enables the valid publication of the phylum name Cyanobacteriota with Cyanobacterium as the type genus. The names Cyanobacterium and its type species Cyanobacterium stanieri were effectively published in 1983 by Rippka and Cohen-Bazire, but the names were not validly published under the rules of the ICNP (then named the International Code of Nomenclature of Bacteria) or the rules of the ICN (International Code of Nomenclature for algae, fungi, and plants, then named the International Code of Botanical Nomenclature). We here propose the names Cyanobacterium gen. nov and Cyanobacterium stanieri sp. nov. for valid publication under the provisions of the ICN. Upon validation these names are also validly published under the ICNP according to General Consideration 5 and Rule 30. We also propose the phylum name Cyanobacteriota phyl. nov. under the rules of the ICNP.

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“…The consortium was grown photoautotrophically in BG-11 medium under 50 µmol m −2 · s −1 photons of cool white light aerated by air enriched with 1.5% CO 2 (vol/vol). DNA was isolated as previously described (1–3). Sequencing was performed twice using the Ion PGM and Illumina MiSeq platforms.…”

Section: Announcementmentioning

confidence: 99%

Draft Genome Sequences of a Putative Prokaryotic Consortium (IPPAS B-1204) Consisting of a Cyanobacterium ( Leptolyngbya sp.) and an Alphaproteobacterium ( Porphyrobacter sp.)

Mironov

Leusenko

Ustinova

et al. 2019

Microbiol Resour Announc

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Draft Genome Sequence of Cyanobacterium sp. Strain IPPAS B-1200 with a Unique Fatty Acid Composition

Cited by 7 publications

References 7 publications

Plants, Cells, Algae, and Cyanobacteria In Vitro and Cryobank Collections at the Institute of Plant Physiology, Russian Academy of Sciences—A Platform for Research and Production Center

Plants, Cells, Algae, and Cyanobacteria In Vitro and Cryobank Collections at the Institute of Plant Physiology, Russian Academy of Sciences—A Platform for Research and Production Center

Validation of the names Cyanobacterium and Cyanobacterium stanieri, and proposal of Cyanobacteriota phyl. nov.

Draft Genome Sequences of a Putative Prokaryotic Consortium (IPPAS B-1204) Consisting of a Cyanobacterium ( Leptolyngbya sp.) and an Alphaproteobacterium ( Porphyrobacter sp.)

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