“…Furthermore, recent studies have revealed that a subset of non‐encapsulated isolates form a distinct phyletic group basal to other pneumococcal strains (Croucher et al ., ; Valentino et al ., ). Thus, we added isolates from this group, ending up with 32 pneumococcal genomes (Antic et al , unpublished) (Keller et al ., ) (light blue, Supporting Information Table S1). Finally, for the MAST, we added seven genomes from isolates from eye infections and non‐encapsulated strains that are distributed throughout the phylogenetic tree (Antic et al ., under review).…”