Draft Genome Sequences of Two Lactobacillus Strains, L. farraginis JCM 14108 ^T and L. composti JCM 14202 ^T , Isolated from Compost of Distilled Shōchū Residue

Abstract

Here, we report the draft genome sequences of two type strains of Lactobacillus, Lactobacillus farraginis JCM 14108T and Lactobacillus composti JCM 14202T, isolated from the compost of distilled shōchū residue. Their genome information will be useful for studies of ecological and physiological functions of these Lactobacillus species.

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“…While genomes sequenced using Roche 454 GS FLX continued to be assembled using Newbler assembler 62 , genomes sequenced using Ion Torrent systems were assembled using Newbler 57 , NGen (DNAStar) 53 61 , and Artemis being used for annotation and curation.…”

“…In 2013, probiotic genome sequencing witnessed a more heterogeneous usage of sequencing platforms with the Applied Biosystems ABI377 and 3700 automated sequencers 45 57 , and Lactobacillus composti 57 were sequenced using Ion Torrent Personal Genome Machine, the genomes of Lactobacillus equi 58 , Lactobacillus animalis 59 , Lactobacillus oryzae, Lactobacillus fabifermentans 60 , and Lactobacillus salivarius 61 were sequenced by Illumina platforms. Roche 454 GS FLX pyrosequencer was used to sequence Lactobacillus gasseri and Lactobacillus namurensis 62 genomes.…”