Drosophila DBT and vertebrate CKI/␦ phosphorylate the period protein (PER) to produce circadian rhythms. While the C termini of these orthologs are not conserved in amino acid sequence, they inhibit activity and become autophosphorylated in the fly and vertebrate kinases. Here, sites of C-terminal autophosphorylation were identified by mass spectrometry and analysis of DBT truncations. Mutation of 6 serines and threonines in the C terminus (DBT C/ala ) prevented autophosphorylation-dependent DBT turnover and electrophoretic mobility shifts in S2 cells. Unlike the effect of autophosphorylation on CKI␦, DBT autophosphorylation in S2 cells did not reduce its in vitro activity. Moreover, overexpression of DBT C/ala did not affect circadian behavior differently from wild-type DBT (DBT WT ), and neither exhibited daily electrophoretic mobility shifts, suggesting that DBT autophosphorylation is not required for clock function. While DBT WT protected S2 cells and larvae from UV-induced apoptosis and was phosphorylated and degraded by the proteasome, DBT C/ala did not protect and was not degraded. Finally, we show that the HSP-90 cochaperone spaghetti protein (SPAG) antagonizes DBT autophosphorylation in S2 cells. These results suggest that DBT autophosphorylation regulates cell death and suggest a potential mechanism by which the circadian clock might affect apoptosis.T he circadian clock produces daily changes in a wide range of physiological activities, as exemplified by the sleep-wake cycle, and is also essential for seasonal changes in response to changing photoperiods. It is found in single-cell organisms such as cyanobacteria as well as multicellular organisms such as humans (1). The disruption of the clock can cause many health problems, including metabolic disease, sleep disorders, or even cancers in humans (2), so it is important to understand its mechanism from both basic and clinical perspectives.Circadian clocks are the result of oscillations of several circadian clock proteins, including those of the period protein (PER) (3). In flies and humans, the casein kinase I ortholog (called the doubletime or dbt protein in flies) is essential for the oscillations of PER because it phosphorylates PER during the day and early evening to cause PER degradation (4-8). During the late night, DBT phosphorylation of PER is reduced, and PER accumulates in the nucleus as a consequence of its interaction with the timeless protein (TIM), which antagonizes phosphorylation of PER by DBT to confer rhythmic regulation of the per and tim genes (9, 10). Hence, the rhythmic phosphorylation of PER by of DBT is essential for the rhythmic accumulation of PER protein and transcriptional feedback that underlie the circadian clock (4-7).In such a mechanism, anything that confers temporal regulation to DBT activity would contribute to the oscillations. Clearly, one such regulator is the timeless protein (TIM), which is degraded in response to light (11-13) but whose accumulation at night leads to a PER/TIM heterodimer in which DBT activity ...