A GaN-based blue photonic crystal surface emitting laser (PCSEL) featured with membrane configuration was proposed and theoretically investigated. The membrane dimension, photonic crystal (PhC) material, lattice constant and thickness were studied by RCWA (Rigorous Coupled Wave Analysis), FDTD (Finite Difference Time Domain) simulations with the confinement factor and gain threshold as indicators. The membrane PCSEL’s confinement factor of active media is of 13~14% which is attributed to multi-pairs of quantum wells and efficient confinement of the mode in the membrane cavity with air claddings. The excellent confinement factor and larger Q factor of resonance mutually contribute to the lower gain threshold of the design (below 400 cm−1 for GaN-PhC with 100 nm thick top and bottom GaN layer, 40 nm hole radius and 40 nm depth). The PhC confinement factor exceeds 13% and 6% for TiO2-PhC with 80 nm and 60 nm PhC thickness and 20 nm and 40 nm distance between PhC and active media, respectively. It is around two times larger than that of GaN-PhC, which is attributed to the higher refractive index of TiO2 that pulls field distribution to the PhC layer.