Peroxisome proliferator-activated receptor ␥ (PPAR␥) and CCAAT/enhancer binding protein ␣ (C/EBP␣) are key activators of adipogenesis. They mutually induce the expression of each other and have been reported to cooperate in activation of a few adipocyte genes. Recently, genome-wide profiling revealed a high degree of overlap between PPAR␥ and C/EBP␣ binding in adipocytes, suggesting that cooperativeness could be mediated through common binding sites. To directly investigate the interplay between PPAR␥ and C/EBP␣ at shared binding sites, we established a fibroblastic model system in which PPAR␥ and C/EBP␣ can be independently expressed. Using RNA sequencing, we demonstrate that coexpression of PPAR␥ and C/EBP␣ leads to synergistic activation of many key metabolic adipocyte genes. This is associated with extensive C/EBP␣-mediated reprogramming of PPAR␥ binding and vice versa in the vicinity of these genes, as determined by chromatin immunoprecipitation combined with deep sequencing. Our results indicate that this is at least partly mediated by assisted loading involving chromatin remodeling directed by the leading factor. In conclusion, we report a novel mechanism by which the key adipogenic transcription factors, PPAR␥ and C/EBP␣, cooperate in activation of the adipocyte gene program.
The conversion of preadipocytes to mature fat-laden adipocytes involves a complex network of transcription factors that have been shown to act in two waves (1-4). The adipogenic cocktail used to stimulate in vitro differentiation of preadipocytes induces the first wave of factors that then subsequently induce the second wave of adipogenic transcription factors. Key components of this second wave are peroxisome proliferator-activated receptor ␥ (PPAR␥) and CCAAT/enhancer binding protein ␣ (C/EBP␣), each of which has been shown to directly promote expression of the adipocyte gene program. In particular, several ex vivo and in vivo studies have demonstrated that PPAR␥ is obligate for adipogenesis (5-7) as well as maintenance of the adipocyte phenotype (8). Similarly, several in vivo models have demonstrated the importance of C/EBP␣ for differentiation and maintenance of white adipose tissue (9-11). C/EBP␣ is also important for ex vivo differentiation of adipocytes, although it is not strictly required for adipocyte differentiation in the presence of ectopic PPAR␥ expression (12). Furthermore, C/EBP␣ has been reported to be specifically involved in activating the gene program driving insulinstimulated glucose uptake (13,14).It is well established that PPAR␥ and C/EBP␣ cooperate to accelerate adipogenesis (12, 15) through their mutual induction of each other (14,(16)(17)(18). In addition, at least some target genes have been shown to be activated by both transcription factors (19-25). More recent genome-wide profiling of C/EBP␣ and PPAR␥ binding sites using chromatin immunoprecipitation (ChIP) combined with microarray analysis (ChIP-chip) or deep sequencing (ChIPseq) have shown that most adipocyte genes in murine adipocytes are associate...