Dyadobacter luticola sp. nov., isolated from a sewage sediment sample

Song, Zhirui; Song, Yali; Yu, Ying; Choi, Lina; Wang, Gejiao; Li, Mingshun

doi:10.1099/ijsem.0.003178

Cited by 11 publications

(8 citation statements)

References 29 publications

Supporting

Mentioning

Contrasting

Order By: Relevance

“…The strain was not sensitive to oxacillin and ceftazidime. Strain Q3-56 T exhibited three peaks at 428, 454 and 478 nm in ethanol, present with maximum absorption at 454 nm and the addition of 1 % KOH broadened the peaks, which was in agreement with the reference strain [3] (Fig. S4), indicating the presence of carotenoids and flexirubin-like pigment in the cells of strain Q3-56 T .…”

Section: Physiologysupporting

confidence: 84%

“…The respiratory isoprenoid quinone of strain Q3-56 T was menaquinone-7 (MK-7), which was consistent with other members of the genus Dyadobacter [3–6]. The major fatty acids (relative amount >6.0 %) of strain Q3-56 T were summed feature 3 (comprising C 16 : 1 ω 7 c /C 16 : 1 ω 6 c and C 16 : 1 ω 6 c /C 16 : 1 ω 7 c ; 41.44%), iso-C 15 : 0 (28.88 %), C 16 : 1 ω 5c (8.08 %) and iso-C 16 : 1 3OH (6.32 %).…”

Section: Chemotaxonomysupporting

confidence: 69%

“…In general, Dyadobacter members are characterized as aerobic, Gram-stain-negative, rod-shaped bacterial cells that occur in pairs in young cultures but form chains of coccoid cell in old cultures. All Dyadobacter members have iso-C 15 : 0 and C 16 : 1 ω 5 c , but depending on the species or strains, summed feature 3 (C 16 : 1 ω 7 c and/or C 16 : 1 ω 6 c ), summed feature 4 (anteiso-C 17 : 1 B and/or iso-C 17 : 1 I), C 16 : 0 , C 16 : 0 3-OH, iso-C 17 : 0 3-OH, iso-C 15 : 0 3-OH and iso-C 15 : 0 2-OH are also found [1–15]. MK-7 is the predominant isoprenoid quinone of this genus.…”

Section: Introductionmentioning

confidence: 99%

“…The DNA G+C content is approximately 44.0–51.3 mol%. Members of the genus Dyadobacter have been isolated from various environments, such as plant material, soil, desert sand, fresh water, glacial samples, seawater and sediment [1–15]. By January 2021, 23 species of this genus with validly published names have been reported (LPSN, www.bacterio.net).…”

Section: Introductionmentioning

confidence: 99%

See 3 more Smart Citations

Dyadobacter sandarakinus sp. nov., isolated from Arctic tundra soil, and emended descriptions of Dyadobacter alkalitolerans, Dyadobacter koreensis and Dyadobacter psychrophilus

Zhang

Peng

Qin

et al. 2021

International Journal of Systematic and Evolutionary Microbiology

View full text Add to dashboard Cite

Strain Q3-56T, isolated from Arctic tundra soil, was found to be a Gram-stain-negative, yellow-pigmented, oxidase- and catalase-positive, non-motile, non-spore-forming, rod-shaped and aerobic bacterium. Strain Q3-56T grew optimally at pH 7.0 and 28 °C. The strain could tolerate up to 1 % (w/v) NaCl with optimum growth in the absence of NaCl. The strain was not sensitive to oxacillin and ceftazidime. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain Q3-56T belonged to the genus Dyadobacter . Strain Q3-56T showed the highest sequence similarities to Dyadobacter luticola T17T (96.58 %), Dyadobacter ginsengisoli Gsoil 043T (96.50 %), Dyadobacter flavalbus NS28T (96.43 %) and Dyadobacter bucti QTA69T (96.43 %). The predominant respiratory isoprenoid quinone was identified as MK-7, The polar lipid profile of strain Q3-56T was found to contain one phosphatidylethanolamine, three unidentified aminolipids, three unidentified lipids and one unidentified phospholipid. The G+C content of the genomic DNA was determined to be 49.1 mol%. The main fatty acids were summed feature 3 (comprising C16 : 1 ω7c/C16 : 1 ω6c), iso-C15 : 0, C16 : 1 ω5c and iso-C16 : 1 3-OH. On the basis of the evidence presented in this study, a novel species of the genus Dyadobacter , Dyadobacter sandarakinus sp. nov., is proposed, with the type strain Q3-56T (=CCTCC AB 2019271T=KCTC 72739T). Emended descriptions of Dyadobacter alkalitolerans , Dyadobacter koreensis and Dyadobacter psychrophilus are also provided.

show abstract

Section: Physiologysupporting

confidence: 84%

Section: Chemotaxonomysupporting

confidence: 69%

Section: Introductionmentioning

confidence: 99%

Section: Introductionmentioning

confidence: 99%

See 2 more Smart Citations

Dyadobacter sandarakinus sp. nov., isolated from Arctic tundra soil, and emended descriptions of Dyadobacter alkalitolerans, Dyadobacter koreensis and Dyadobacter psychrophilus

Zhang

Peng

Qin

et al. 2021

International Journal of Systematic and Evolutionary Microbiology

View full text Add to dashboard Cite

show abstract

“…The sole isoprenoid quinone detected in strain U1 T was MK-7, which is in good agreement with the results that members of the genus Dyadobacter contain MK-7 as the major isoprenoid quinone [2–11, 13, 14]. The major cellular fatty acids (>5 % of the total fatty acids) of strain U1 T were iso-C 15 : 0 (20.0 %), C 16 : 0 (10.0 %), C 16 : 1 ω5 c (8.6 %) and summed feature 3 (comprising C 16 : 1 ω 6 c and/or C 16 : 1 ω7 c , 43.6 %).…”

Section: Chemotaxonomic Analysissupporting

confidence: 88%

Dyadobacter pollutisoli sp. nov., isolated from plastic waste landfill soil

Kim

Kyeong

et al. 2023

International Journal of Systematic and Evolutionary Microbiology

View full text Add to dashboard Cite

A Gram-stain-negative, yellow-pigmented and facultatively aerobic bacterium, designated strain U1T, was isolated from plastic dumped soil sampled in the Republic of Korea. Cell of strain U1T were non-motile rods showing catalase-negative and oxidase-positive activities. Strain U1T was shown to grow at 10–37 °C (optimum, 25–30 °C) and pH 6.0–9.0 (optimum, pH 8.0), and in the presence of 0–0.5 % (w/v) NaCl (optimum, 0 %). Strain U1T contained iso-C15 : 0, C16 : 0, C16 : 1 ω5c and summed feature 3 (comprising C16 : 1 ω6c and/or C16 : 1 ω7c) as the major cellular fatty acids (>5 %) and menaquinone-7 as the sole respiratory quinone. Phosphatidylethanolamine, two unidentified aminolipids and three unidentified lipids were identified as the major polar lipids. The DNA G+C content of strain U1T calculated from the whole-genome sequence was 45.5 mol%. Phylogenetic analyses based on 16S rRNA gene sequences showed that strain U1T formed a distinct phylogenetic lineage within the genus Dyadobacter . Strain U1T has the highest 16S rRNA sequence similarity to Dyadobacter bucti QTA69T (97.9 %). Average nucleotide identity and digital DNA–DNA hybridization values between strain U1T and D. bucti QTA69T were 74.6 % and 18.9 %, respectively. Based on phenotypic, chemotaxonomic and molecular features, strain U1T represents a novel species of the genus Dyadobacter , for which the name Dyadobacter pollutisoli sp. nov. is proposed. The type strain is U1T (= KACC 22210T=JCM 34491T).

show abstract

Dyadobacter luteus sp. nov., isolated from rose rhizosphere soil

Chen

Gao

et al. 2019

Arch Microbiol

View full text Add to dashboard Cite

Dyadobacter luticola sp. nov., isolated from a sewage sediment sample

Cited by 11 publications

References 29 publications

Dyadobacter sandarakinus sp. nov., isolated from Arctic tundra soil, and emended descriptions of Dyadobacter alkalitolerans, Dyadobacter koreensis and Dyadobacter psychrophilus

Dyadobacter sandarakinus sp. nov., isolated from Arctic tundra soil, and emended descriptions of Dyadobacter alkalitolerans, Dyadobacter koreensis and Dyadobacter psychrophilus

Dyadobacter pollutisoli sp. nov., isolated from plastic waste landfill soil

Dyadobacter luteus sp. nov., isolated from rose rhizosphere soil

Contact Info

Product

Resources

About