THANK you for providing us with the opportunity to respond to the Communication regarding our published, peerreviewed Cytometry Part A paper entitled ''User-defined protein marker assay development for characterization of circulating tumor cells using the CellSearch Ă system'' [Cytometry A 2012;81A:983-995; doi: cyto.a.22158]. We appreciate the interest in our work and will address the three specific concerns of Rossi and colleagues in this response.(1) Optimization conducted on spiked samples only, without further validation in ex vivo samples:Rossi et al. express concern regarding our use of only spiked samples throughout the study and question the soundness of our approach based on lack of validation in clinical samples (1). As is clearly stated in the Introduction of the original article, the primary objective of our study was not to demonstrate the clinical significance of our developed assays but instead to provide a detailed description of the process of user-defined protein marker development and optimization using the CellSearch system such that it may act as a reference guide for other users of this platform. Rossi et al. subsequently state that in order to prove the clinical significance of a new method, optimization must be undertaken in the setting of a pilot set of patients. We could not agree more with this statement, and as we move forward with implementing these assays in our own lab, this is exactly our course of action.Our interpretation of our study outcomes was based solely on the assays' expected performance when using highly controllable models (cell lines with known expression of the user-defined marker). We hypothesized that if optimized results could not be obtained in these ''best case scenario'' model systems, then the assays would be unlikely to work with a high degree of efficiency in more variable samples obtained from patients. At no point do we assert that our model system replicates the heterogeneous nature of patient samples but instead that our findings be utilized as a starting point for developing user-defined markers on the CellSearch that will subsequently be considered for use in a clinical setting. This is evidenced by our use of multiple cell lines when optimizing the CD44 protocol. This approach allowed us to examine differences in assay performance when presented with varying degrees of marker expression (high/low/negative). These results could not have been obtained from patient samples since the level of marker expression and the presence or absence of a marker would not be known. We, therefore strongly agree with Rossi et al. that clinical validation of all developed assays of this nature, regardless of the platform utilized, is absolutely necessary. However, initial assay validation with known controls (as is described in our article) is always required first in order to ensure appropriate quality control and the sensitivity/specificity of the assay before implementing it for use in patient samples.(2) The choice of FCM as a reference method:The second concern of...