We report the isolation of 24 novel genotypes of TT viruses from a surgically removed spleen of a patient with Hodgkin's disease. The sequence analysis of our 24 isolates revealed the remarkable heterogeneity of TT virus isolates not only from the same patient but also from the same biopsy material. These isolates belong to four phylogenetic groups of TT viruses. Nucleotide sequence analyses revealed five distinct genotypes (tth3, tth4, tth5, tth6, and tth7). The limited variation in sequence identity of the other isolates defines the latter as variants of four of these genotypes. A group of 6 isolates (the tth7 group) revealed a reorganization of open reading frame 1 (ORF1) leading to one larger and a varying number of smaller ORFs. The nucleotide difference of the full-length genomes was less than 1%. A variation of 69 to 97% in amino acids of a second group of 8 isolates (the tth3 group) was restricted to the hypervariable region of ORF1, indicating the existence of a quasi-species. These isolates differed by less than 2% in the remainder of their nucleotide sequences. An alignment of these isolates with 79 previously reported TT virus genotypes permits the proposal of TT virus genera and species within the family Anelloviridae in analogy to a previous proposal for the papillomaviruses (family Papillomaviridae).TT viruses (TTV) are ubiquitous in nature and have been demonstrated in more than 90% of serum samples from healthy individuals where they persist over time (14,16,27,41). Viral particles have been purified from feces (17, 34) and, in addition, are excreted in saliva, breast milk, and bile juice (9,38,47,49). Transplacental transmission from mother to child has been controversial, but postnatal transmission has been confirmed repeatedly (15,20,24,30,33,37,48,51,52,57 (39,44). Peripheral blood mononuclear cells act as a reservoir for TTV (41), but the highest viral load is found in the granulocytes (54). Viral transcription naturally occurs in bone marrow cells and not in peripheral blood mononuclear cells (40), although transcription in vitro has been achieved by DNA transfection into stimulated peripheral blood monocytes (29) and in a monkey cell line (19).A large number of full-length or near full-length genomes of TTV has been isolated from humans and primates. They have also been identified in farm animals (23), although the genomes of recent isolates from pigs, dogs, and cats proved to be considerably smaller in size than the TTV found in humans and primates (43). The highly conserved noncoding region constitutes about one-third of the genome. The coding region consists of a large open reading frame (ORF), ORF1, coding for the viral capsid protein as well as the smaller ORF2, ORF3, and ORF4. Additional mRNAs result from splicing events (19,40). Many different genotypes have been isolated, and an extremely wide range of DNA sequence divergence has been demonstrated (45). The steadily increasing number of new genotypes and the high sequence variability point to the need for a uniform and defined cla...