Charge transfer doping efficiencies of π-stacked poly(3-hexylthiophene) (P3HT) aggregate nanofibers are studied using spectroscopic and electron microscopy probes. Solution dispersions of self-assembled P3HT nanofibers are doped in the ground electronic state by adding varying amounts (w/w%) of the strong charge transfer dopant, 2,3,5,6-tetrafluoro-7,7,8,8tetracyanoquinodimethane (F 4 -TCNQ). Careful control of self-assembly conditions allows us to select either the H-and J-aggregate limiting forms, which differ primarily in the degree of purity (i.e., molecular weight fractionation) and nanomorphology. Electron paramagnetic resonance (EPR), electronic absorption, and Raman spectroscopy of F 4 -TCNQ -:P3HT + species are then used