The petrogenesis of A-type granites with different occurrences in the Nanling Range remains unclear. In this study, a case study of the Jiuyishan complex massif and Xianghualing intrusive stocks was conducted to determine this problem. The Jiuyishan complex massif is composed of four units (Jinjiling, Pangxiemu, Shaziling and Xishan). These four units have similar zircon U-Pb ages of approximately 153 Ma, with high Zr + Nb + Ce + Y contents (>350 ppm), high 10,000 Ga/Al ratios (>2.6), and a high crystallization temperature, indicating A-type affinities. They show a gradual change in lithology and geochemistry, implying a fractional crystallization process. These units also have similar εNd(t) values (−8.2 to −5.8) and zircon εHf(t) values (−7.5 to −2.2) except for the Shaziling MMEs (mafic microgranular enclaves) (−14.2 to 4.8), demonstrating their lower crustal source. However, the Shaziling unit may have contributed mantle-derived magma based on the geochemical data of its hosted MMEs. In comparison, the two Xianghualing intrusive stocks have similar geochemical features but exhibit highly evolved features (high Rb, U, Y, Ta and Nb contents and low Eu, Ba, Sr, P, Ti, Ca, Mg and Fe contents, with V-shaped REE distribution patterns). They have different zircon U-Pb ages of approximately 160 Ma and 155 Ma. The two stocks also have similar whole-rock εNd(t) values (−6.5 to −5.7) and zircon εHf(t) values (−7.6 to −2.7) and equally illustrate a lower crustal source region. Combining with their vertical zonation, they may have experienced remarkable fractional crystallization with possible assimilation processes. We propose that the Jiuyishan complex and Xianghualing stocks have two distinct fractional crystallization mechanisms during their formation. The Jiuyishan complex was formed by in situ crystal mush fractionation, while the Xianghualing stocks were formed by flowage differentiation during magma ascent or gravitational settling during magma solidification after emplacement. However, more than one mechanism affected the fractional crystallization processes of these granitic rocks.