Traditional evaluation methods based on static elastic-plastic analysis usually produce results with low fitting degree compared with actual data. In this paper, a new seismic performance evaluation method is proposed. Firstly, several evaluation indexes of green ecological building structure are calculated. Subsequently, a cumulative damage model is established based on fatigue life curve and Miner criterion, which allows to determine the total dissipated strain energy and damage index. In order to verify the effectiveness of this method, it is compared with the traditional static elastic-plastic analysis method through experimental tests. The results show that compared with the traditional method of 50% to 60%, the proposed method achieves a significantly higher fitting degree with the actual data, ranging from 70% to 92%. This emphasizes the superiority and reliability of the proposed method in evaluating the seismic performance of green ecological building structures, and provides insights for safer and more flexible building practices.