“…The observed distribution of the main mtDNA haplotype lineages was interpreted to reflect past lake‐level oscillations (Theis et al., 2014). Such fluctuations in the lake level, caused by variation in hydrology through time (Cohen, Lezzar, Tiercelin, & Soreghan, 1997; McGlue et al., 2010; Scholz et al., 2007), have previously been documented to affect population dynamics in rock‐dwelling, littoral cichlid species from lakes Tanganyika (Baric, Salzburger, & Sturmbauer, 2003; Koblmüller et al., 2011; Sturmbauer, Baric, Salzburger, Rüber, & Verheyen, 2001) and Malawi (Genner, Knight, Haesler, & Turner, 2010). In a follow‐up study based on single nucleotide polymorphisms (SNPs) derived from genomic DNA (via restriction site‐associated DNA sequencing; RADseq), we confirmed a deep divergence in A. burtoni populations in the South of Lake Tanganyika, in this case, however, between the Lufubu River and all remaining populations including the fish sampled at the estuary of the Lufubu River (Egger et al., 2017).…”