“…The mixing of groundwater and surface water can have substantial impact on stream and streambed thermal patterns [ Malcolm et al ., ; Hannah et al ., ; Krause et al ., ], the availability of dissolved oxygen, nutrient cycling and carbon respiration [ Pinay et al ., ; Mulholland et al ., ; Krause et al ., ; Pinay et al ., ; Zarnetske et al ., ], transport and transformation of contaminants [ Conant et al ., ; Ellis and Rivett , ; Rivett et al ., ], as well as the ecohydrological functioning of the riverine environment [ Brunke and Gonser , ; Dole‐Olivier et al ., ; Boulton et al ., ; Malcolm et al ., 2002; Stubbington et al ., ; Robertson and Wood , ; Krause et al ., ]. A major challenge for quantifying the impact of physical streambed controls on the biogeochemical and ecohydrological functioning is the difficulty to identify temporal dynamics and detailed spatial patterns of groundwater‐surface water exchange at stream reach and larger scales [ White , ; Krause et al ., ].…”