Cavalier -Smith (2002) established the name Chromalveolata by hypothesizing the presence of a common plastid in the dinofl agellates and heterokonts, which is thought to have arisen from a single event of secondary endosymbiosis with an ancestral red alga (Cavalier-Smith 1999;Adl et al. 2005). The name specifi cally refers to the bag-like sacs called alveoli that underlie the cell membrane ( alveus , Lat. = small cavity) and to the fact that many members in this group are photosynthetic ( chroma , Lat. = color).There are six lineages within the Chromalveolata : apicomplexans , ciliates , cryptomonads , dinofl agellates , haptophytes and stramenopiles . The apicomplexans, ciliates, dinofl agellates and stramenopiles form a monophyletic assemblage, while the cryptomonads and haptophytes form a weakly-supported group (Harper et al. 2005;Hackett et al. 2007). Cryptomonads, haptophytes, and stramenopiles are grouped in the Chromista based on the shared features of their plastids (i.e., the presence of four bounding membranes and confl uence of the outermost plastid membrane with the nuclear envelope). The Alveolata contain the apicomplexans, ciliates and dinofl agellates and, in contrast to the Chromistan groups, their outermost plastid membrane is not connected to the nuclear membrane (Schnepf and Elbr ä chter 1999).Recently, Strittmatter et al. (2009) reviewed the current knowledge of basal lineages of marine Oomycetes . Most groups of marine fungal-like organisms have been poorly explored, however, mainly due to methodological limitations, the limited number of researchers working on marine fungal-like taxa, and the biotrophic lifecycle of most parasitic forms.In this chapter we will briefl y review the information available on marine and estuarine Chromalveolata , sensu Adl et al. (2005), which includes the Alveolata , the Stramenopiles (or Chromista ), the Haptophyta, and the Cryptophyceae . In particular, we will focus on the heterotrophic members of the super-group, i.e., the phyla Oomycota and Hyphochytriomycota within the subgroup Chromista (commonly referred to as " heterotrophic stramenopiles " or " heterokonts " ) and the Perkinsozoa ( " perkinsids " ) within the subgroup Alveolata. The fungal-like Labyrinthulomycota and the Phytomyxea will be addressed in the following two chapters of this book (Chapters 12 and 13). Species names used in this contribution are taken from the current scientifi c names in Index Fungorum ( www.indexfungorum.org ), from MycoBank ( www.mycobank.org ) for fungallike organisms and Algaebase ( www.algaebase.org ) for algae.