Seawater carbonate chemistry of the mixed layer of the oceans is changing rapidly in response to increases in atmospheric CO 2 . The formation and dissolution of calcium carbonate is now known to be strongly affected by these changes, but many questions remain about other controls on biocalcification and inorganic cementation that confound our attempts to make accurate predictions about the effects on both coral reef organisms and reefs themselves. This chapter overviews the current knowledge of the relationship between seawater carbonate chemistry and coral reef calcification, identifies the hurdles in our understanding of the two, and presents a strategy for overcoming those hurdles.