The study was carried out to understand the effect of inhomogeneous microstructure on thickness variation in superplastically formed bulge. Friction stir processing was performed at rotational and traverse speeds of 720rpm and 155mm/min respectively on a 6mm sheet maintaining 50% overlap on the retreating side. Different probe dimensions were selected to obtain different proportions of fine grained stir zone in thickness direction. The proportions of the fine grained stir zone were 25%, 50%, 72% and, 100%. The sheets containing inhomogeneous microstructure were subjected to superplastic bulge forming under constant gas pressure up to a bulge height of 23.5mm. The sheet which was processed with 72% fine grains showed lower thickness variation from edge to apex and the bulge shape in this condition was close to the ideal spherical profile.