The enzyme hydroxycinnamoyl-CoA:shikimate hydroxycinnamoyltransferase (HCT) is involved in the production of methoxylated monolignols that are precursors to guaiacyl and syringyl lignin in angiosperm species. We identified and cloned a putative HCT gene from Pinus radiata, a coniferous gymnosperm that does not produce syringyl lignin. This gene was up-regulated during tracheary element (TE) formation in P. radiata cell cultures and showed 72.6% identity to the amino acid sequence of the Nicotiana tabacum HCT isolated earlier. RNAi-mediated silencing of the putative HCT gene had a strong impact on lignin content, monolignol composition, and interunit linkage distribution. AcBr assays revealed an up to 42% reduction in lignin content in TEs. Pyrolysis-GC/MS, thioacidolysis, and NMR detected substantial changes in lignin composition. Most notable was the rise of p-hydroxyphenyl units released by thioacidolysis, which increased from trace amounts in WT controls to up to 31% in transgenics. Two-dimensional 13 C-1 H correlative NMR confirmed the increase in p-hydroxyphenyl units in the transgenics and revealed structural differences, including an increase in resinols, a reduction in dibenzodioxocins, and the presence of glycerol end groups. The observed modifications in silenced transgenics validate the targeted gene as being associated with lignin biosynthesis in P. radiata and thus likely to encode HCT. This enzyme therefore represents the metabolic entry point leading to the biosynthesis of methoxylated phenylpropanoids in angiosperm species and coniferous gymnosperms such as P. radiata.lignin ͉ HCT ͉ tracheary elements T he global trend toward a biomaterials-based economy makes plant cell walls increasingly important as renewable resources for the production of biofuels and biocomposites. Lignin is the second most abundant terrestrial biopolymer after cellulose and a major structural component of cell walls in woodforming tissues (1). The content, composition, and structure of lignin all have considerable impact on the utilization of plantderived materials and have therefore been the subject of intensive research (1, 2). Lignins are heterogeneous cell wall polymers derived primarily from hydroxycinnamyl alcohols via combinatorial radical coupling reactions (3). Typically, they make up 20-30% of the cell wall material in woody tissue of both angiosperm and gymnosperm species. Lignin in coniferous gymnosperms such as Pinus radiata does not contain syringyl (S) components, which makes it different from lignin of many other vascular plants including angiosperms (4).We have developed a P. radiata callus culture system to better assign function to genes associated with cell wall-related processes such as lignification in conifers. These callus cultures can be transformed and subsequently induced to differentiate into tracheary elements (TEs), the main cellular components of wood in conifer species (5). The biochemical composition of cell wall polymers in differentiated TEs is similar to those produced in P. radiata wood...