The effect of dielectric barrier discharge (DBD) plasma treatment was studied on the surface characteristics and coating performance of transparent epoxy resin on the surface of particleboard (PB) and medium-density fiberboard (MDF). The plasma treatment was performed at three plasma energies (10, 15, and 20 kW) and three distances from the nozzle (10, 20, and 30 mm). Analyzing the samples by Fourier transform infrared (FTIR) spectroscopy and X-ray photoelectron spectroscopy (XPS) indicated the changes of their chemical structure by means of the plasma treatment. The contact angle study showed a significant increase in surface wettability after plasma treatment with a pronounced effect observed by treatment parameters. The surface roughness was also significantly increased by the plasma treatment. The strength of the coating adhesion to the surface of the PB and MDF composite panels was also significantly improved by the plasma treatment, while no obvious trend was observed by treatment parameters. The highest adhesion strength of 2.03 MPa and 3.63 MPa were obtained by the PB and MDF samples, respectively, treated at a 10 mm nozzle distance and 15 kW plasma energy. The scratch resistance of the epoxy coatings showed a similar trend as the adhesion strength illustrating an inferior isolated surface of the coating after the plasma treatment.