The cyanobacterium Synechococcus sp. strain PCC 7002 is a cobalamin auxotroph and utilizes this coenzyme solely for the synthesis of L-methionine by methionine synthase (MetH). Synechococcus sp. strain PCC 7002 is unable to synthesize cobalamin de novo, and because of the large size of this tetrapyrrole, an active-transport system must exist for cobalamin uptake. Surprisingly, no cobalamin transport system was identified in the initial annotation of the genome of this organism. With more sophisticated in silico prediction tools, a btuB-cpdA-btuC-btuF operon encoding components putatively required for a B 12 uptake (btu) system was identified. The expression of these genes was predicted to be controlled by a cobalamin riboswitch. ) developed a cobalamin-dependent yellow fluorescent protein reporter system in a Synechococcus sp. strain PCC 7002 variant that had been genetically modified to allow cobalamin-independent growth. This reporter system was exploited to validate components of the btu uptake system by assessing the ability of targeted mutants to transport cobalamin. The btuB promoter and a variant counterpart mutated in an essential element of the predicted cobalamin riboswitch were fused to a yfp reporter. The combined data indicate that the btuB-cpdA-btuF-btuC operon in this cyanobacterium is transcriptionally regulated by a cobalamin riboswitch.
IMPORTANCEWith a cobalamin-regulated reporter system for expression of yellow fluorescent protein, genes previously misidentified as encoding subunits of a siderophore transporter were shown to encode components of cobalamin uptake in the cyanobacterium Synechococcus sp. strain PCC 7002. This study demonstrates the importance of experimental validation of in silico predictions and provides a general scheme for in vivo verification of similar cobalamin transport systems. A putative cobalamin riboswitch was identified in Synechococcus sp. strain PCC 7002. This riboswitch acts as a potential transcriptional attenuator of the btu operon that encodes the components of the cobalamin active-transport system. S ynechococcus sp. strain PCC 7002 is a euryhaline, unicellular cyanobacterium that tolerates high light intensities and a wide range of NaCl concentrations (1, 2). This organism has one of the highest growth rates among cyanobacteria (1, 3) and is naturally transformable (4). Furthermore, the genome of Synechococcus sp. strain PCC 7002 has been sequenced (http://www.ncbi.nlm.nih .gov/), and a versatile system for genetic complementation and overexpression exists for this organism (5). Although it is generally considered to be a photoautotroph, Synechococcus sp. strain PCC 7002 actually has an obligate requirement for exogenous vitamin B 12 (cobalamin) (6). The average reported concentration of cobalamin in seawater is around 3 ng liter Ϫ1 (or 0.003 g liter Ϫ1 ) (7) but exhibits variable vertical distribution (8). As a marine organism incapable of synthesizing cobalamin de novo (9, 10), Synechococcus sp. strain PCC 7002 thus needs a specific and effective m...