ligands embedded in apposed cell membranes is ubiquitous (1-7). Ever since the seminal work of Bell (8), many authors have considered how receptor-ligand binding in the membrane environment will differ from the same interactions measured in solution (9-13). All of these studies consider the generic physical effects of confining receptors and ligands to two apposed cell membranes. Given the same cellular environment, these effects apply universally, regardless of the molecular characteristics of specific receptors and ligands. For example, elastic forces imposed by cell membranes reduce the half-life of all receptorligand complexes in a similar way (8). This previous work did not identify that differences between the binding characteristics of soluble receptors and ligands and the same molecules at a cell-cell junction could depend on specific molecular features of these species.T lymphocytes (T cells) coordinate adaptive immune responses, and their activation requires the binding of T cell receptor for antigen (TCR) with peptide-MHC (pMHC) molecules expressed on antigen-presenting cells. The half-life of this binding interaction is often a good predictor of the ability of a particular pMHC molecule to stimulate T cell activation (14-18). However, many exceptions to this observation have been reported (19)(20)(21)(22)(23)(24)(25)(26). Krogsgaard et al. (26) studied how T cells bearing the same TCR are stimulated by different peptides bound to a particular MHC protein. These data showed that, for most pMHC ligands, activation potential increased with the half-life of the TCR-pMHC complex (measured using soluble molecules and surface plasmon resonance). However, there were notable outliers, and these peptides stimulated T cells more efficiently than would be predicted from the measured TCRpMHC half-lives. Krogsgaard et al. (26) also found that increases in a second parameter, change in heat capacity upon binding, which is often a measure of changes in conformation (27-30), correlated with the stimulatory ability of the anomalous ligands. Specifically, when T cell stimulation potency was graphed as a function of the product of half-life (measured using soluble molecules) and change in specific heat capacity upon TCRpMHC binding, a good fit to all of the data were obtained. The origin of such a correlation is unknown.Here, we show that, if there are significant conformational changes during receptor-ligand binding and the receptor͞ligand has relatively inflexible molecular subdomains, the half-life of the complex will be longer at a cell-cell junction compared with that measured using soluble molecules. If intracellular signaling cascades that translate receptor-ligand binding to functional responses depend on the half-life (14-18, 31, 32), the relevant half-life is that in the cell membrane environment. Therefore, receptors͞ligands with the molecular characteristics noted above will be more stimulatory than the shorter half-lives measured in solution would suggest. We derive a formula for the increased half-life o...