Most Sym plasmid-localized nodulation genes of Rhizobium leguminosarum bv. viciae are only expressed upon activation of the NodD protein by plant flavonoids, e.g., naringenin (S. A. J. Zaat, C. A. Wijffelman, H. P. Spaink, A. A. N. van Brussel, and B. J. J. Lugtenberg, J. Bacteriol. 169:198-204, 1987). As part of a study on the mechanism of NodD protein activation, the mechanism of uptake and the intracellular fate of [3H]naringenin were studied. Naringenin was accumulated by Rhizobium cells without apparent metabolic conversion to an 80-fold-higher concentration in a process which did not require any of the other Sym plasmid-localized nod genes. Naringenin accumulation was nonsaturable, highly reversible, and not inhibited by the presence of other flavonoids or the metabolic inhibitors potassium cyanide, sodium azide, 2,4-dinitrophenol, and carbonyl cyanide m-chlorophenylhydrazone. These data indicate an accumulation mechanism without high affinity sites which does not use cellular energy. In vitro, naringenin has high affinity for the cytoplasmic membrane. This binding was pH dependent, very high at pH 5.7 and not present anymore at pH 9.7. A similar pH dependency was found for the affinity of naringenin for the olive oil fraction of a biphasic olive oil-water system. pH-dependent changes in the UV spectrum indicate ionization of naringenin at high pH to a negatively charged form. Since it has recently been shown that the nodD gene product is located in the cytoplasmic membrane (H. R. M. Schlaman, H. P. Spaink, R. J. H. Okker, and B. J. J. Lugtenberg, J. Bacteriol., in press), our data are consistent with a model in which the un-ionized form of naringenin accumulates in the cytoplasmic membrane and activates, in a metabolically unaltered form, the NodD protein.Bacteria of the genus Rhizobium interact with leguminous plants in a host-specific manner and form nitrogen-fixing root nodules. In an early stage of this symbiosis, free-living bacteria attach to root hair tips, induce marked root hair curling and other visible alterations of the root morphology, and subsequently enter the host plant via infection threads in the root hairs (21,(23)(24)(25). The bacterial nod (for nodulation) genes required in this early stage are located on a large so-called Sym (for symbiosis) plasmid and code for "common" and host-specific nodulation functions (13). Transcription of the nod genes is mediated by the nodD regulatory gene product upon activation by flavonoids exuded by the plant roots (5,11,14,19,20,26,27).The host specificity of the symbiosis is partly determined by the source of the nodD gene and the sets of inducers present in the root exudate (22,28). In contrast to strains of Rhizobium leguminosaruim bv. viciae and R. legiuminosariiin bv. trifolii, Rhizobium meliloti contains three functional copies of nodD, each of which may play different regulatory roles in the establishment of host-specific symbiosis (9). Evidence has been provided that the nodD product binds to the nodA promotor. This binding is independent of...