Infertility in cattle is a major concern of farmers worldwide and despite the enormous improvements in assisted reproduction technologies, the success rates of pregnancies are still low. Embryonic loss is considered one of the main factors of infertility in cattle. As such, the identification of genetic markers for embryo quality and development can help elucidate the molecular mechanisms involved in the formation of embryos with the highest developmental potential. In a previous study, using nextgeneration RNA sequencing, we identified novel transcripts and alternatively spliced genes that were associated with embryo quality. The objectives of this study were to characterize these transcripts and validate their expression in new biological replications of embryos using quantitative real-time PCR. Two types of embryos differing in morphological and developmental statuses (blastocysts and degenerate embryos) were produced using in vitro fertilization. Quantitative expression of eight novel transcripts revealed a range of 2.5-to 90-fold difference in expression between degenerate embryos and blastocysts. Some of these novel transcripts showed sequence similarity to human and cattle genes known to affect differentiation, growth and development. In addition, expression analysis of alternative splicing isoforms of five genes (MYL6, NOP10, RNF187, RPS24 and RPS28) revealed significant differential expression of these isoforms in the different embryo types. Thus, results of this study suggest that novel transcripts and alternatively spliced genes, found to be differentially expressed between blastocysts and degenerate embryos, can be used as markers for blastocyst formation and development.Keywords: embryo, fertility, gene expression, novel transcripts, alternative splicing
ImplicationsOver the last 40 to 50 years there has been a significant decline in reproductive performance of dairy cattle, due in part to low fertilization rates and early embryonic loss. Although genetics plays an important role in embryo development, the identification of genes associated with embryo quality and pregnancy success has been a serious challenge. In this study, we characterized several genes that showed altered expression in preimplantation embryos that do not develop normally to the blastocyst stage. These genes can be used as candidate markers for embryo quality in cattle.
IntroductionIn the last few decades, production of embryos by in vitro fertilization (IVF) has become a common practice for the treatment of infertility in both humans and cattle, and although IVF procedures are considered to be a true revolution in the field of fertility, the success rate of IVF pregnancies is still low. For example, in humans, , 8 out of 10 transferred embryos fail to implant successfully (Bromer and Seli, 2008), most likely because of the inability to identify embryos with the best development potential. In cattle, there has been a significant decline in fertility over the past few decades (Dobson et al., 2007;Leroy et al., 2008) because of low...