antigen presentation ͉ immunodominance ͉ protein folding T wo antigen-processing pathways have been described for the loading of MHC class II molecules (MHC-IIs) with peptides for presentation to CD4 ϩ T cells. In the classical pathway, exogenous antigens taken up by antigen-presenting cells (APCs) are unfolded and cleaved into fragments during transport through the increasingly acidic endosomal network, from early endosomes to lysosomes. Newly synthesized MHC-IIs associated with the invariant chains (Iis) are transported to a late endocytic compartment where the Ii is removed by proteolytic cleavage, leaving the class II Ii-derived peptide (CLIP) bound to the peptide-binding groove (1, 2). This is followed by peptide editing, which is catalyzed by the MHC-encoded DM molecule (3-6). The initial forms of antigen that bind to MHC-IIs may be short peptides, 12-26 aa in length, generated by lysosomal proteases (7,8). A second pathway has been described in which mature MHC-IIs recycle from the cell surface to early endosomes and load antigenic peptides that are made available in less acidic and less aggressively proteolytic environments, independently of newly synthesized MHC-IIs, Iis, and DM molecules (9-12).A long-standing question concerning antigen processing in the MHC class II pathway is whether peptides are always generated first and then loaded (trim/bind model) or whether epitopes can be generated after the binding of intact antigen to MHC-IIs (bind/trim model) (13-16). The former model has been presumed to prevail, but Sercarz et al. (13,14) have suggested that immunodominant epitopes within an intact, partially unfolding antigen might first bind to MHC-IIs and subsequently be trimmed to short peptide epitopes that roughly corresponded to the ''footprint'' of the MHC binding site. This latter model, or MHC-guided processing, has its roots in reports of MHC-IIs binding to long polypeptides (17-19). It remains unclear, however, whether these large polypeptides were the precursors of immunogenic peptides or whether they were presented as large polypeptides. The structure of several MHC-II/peptide complexes has now been solved, and it seems likely that peptides preferentially interact with the peptide-binding groove in an extended conformation, although some ''bulging'' is permitted for certain MHC-II/peptide combinations (20, 21). These data preclude the binding of MHC-IIs to elements of a protein antigen containing significant secondary structure. One mechanism by which large proteins or polypeptides bind to MHC-IIs might therefore be solvent-exposed regions of eight or more amino acids that adopt an extended or random conformation. Several proteins are known to display a more ''relaxed'' conformation during either thermal or chemical denaturation or during biogenesis. The latter may therefore give rise to a pool of substrates capable of binding to MHC-IIs and engaging in MHC-guided processing.Here we describe how the notion of MHC-guided processing is related to the immunodominance of a recently identified M...