The effect of surface chemistry on the glass transition of polycarbonate (PC) inside cylindrical nanopores is studied. Polycarbonate is melt-wetted into nanoporous anodic aluminum oxide (AAO) treated with hydrophobic alkyl-and fluorosilanes of varying length. The curvature observed at the nanowire tips is consistent with a contact angle descriptive of polycarbonate−AAO surface interactions. Differential scanning calorimetry (DSC) thermograms reveal a distinct broadening of the T g that is related to the motion of polymer chains at the nanopore wall as well as at the core. DSC and thermal gravimetric analysis (TGA) show that polycarbonate infiltrated into a naked AAO template (without silane treatment) degrades upon heating, suggestive of a surface-catalyzed degradation mechanism. It is further shown that silane treatment largely prevents PC thermal degradation.T he effect of confinement on the glass transition temperature (T g ) remains a topic of intense discussion. As a polymer film decreases in thickness, the effect of the surface grows in dominance, and the films' properties differ from bulk. The nature of the supporting surface can drastically alter the T g for amorphous polymer thin films. For instance, free-standing poly(styrene) films showed a greater reduction in T g as compared to films deposited on hydrogen-passivated Si(111). 1 Elsewhere, the T g of poly(styrene) thin films decreased or increased depending on whether the supporting surface was repulsive or attractive, respectively. 2 In this work we report the effect of surface chemistry on interactions between polycarbonate (PC) and nanoporous silane-modified anodic aluminum oxide (AAO) templates as well as the resulting changes in the glass transition of the polymer (Figure 1). This configuration is convenient for isolating the effect of surface chemistry because AAO templates are easily modified via silanes and because the infiltrated polymer has negligible free surface. Modification of AAO templates using silane chemistry has been previously demonstrated using both vapor-phase 3−6 and solution approaches. 7−11 PC, popularly used in many industrial applications, is a semicrystalline polymer. The reported melting temperature (T m ) and T g is 220−260°C and 140−151°C, respectively. 12