During germination and seedling establishment, the total pyrophosphate-dependent phosphofructokinase (PFP) activity in the cotyledons increases. Two types of subunits with molecular weights of 68 (a-subunit) and 65 (,-subunit) kilodaltons are present. The increase in activity coincides with an approximately 10-fold increase in #-subunit and twofold increase in a-subunit content. Different isoforms of PFP are present at all stages of incubation, but the ratio between the isoforms significantly changes. A linear relationship exists between the ratio of the two PFP subunits and the ratio of the two isoforms of the enzyme. The more anionic (peak 2) isoform of the enzyme apparently is favored by a high ratio of total #-subunit to a-subunit content.The is-to a-subunit ratio of the peak 2 isoform is also approximately fivefold higher than that of the peak 1 (less anionic) isoform. It is evident that the two subunits are not coordinately expressed and the level of expression of each subunit appears to be the primary factor determining the molecular form in which the enzyme is present. In some tissues, only the 65 kilodalton polypeptide is expressed in large amounts. The peak I isoform has a higher affinity for pyrophosphate than the peak 2 isoform, while the affinity for fructose-6-phosphate is similar. Both molecular forms are activated by fructose-2,6-bisphosphate.In addition to the ATP-dependent phosphofructokinase, plants also contain a pyrophosphate-dependent phosphofructokinase, PFP,2 that catalyzes the conversion of Fru-6-P to Fru-2,6-P2 in the cytosol. Since the discovery in 1979 of PFP in pineapple leaves (14), significant levels of this enzyme have been found in a variety of plant tissues (1,3,4,11,17,21,23,24,28,29,33).Although the kinetic properties of PFP from several plant species have been studied (4,8,11,19,(24)(25)(26)28) 2Abbreviations: PFP, PPi:D-fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90); Fru-6-P, fructose-6-phosphate; Fru-2,6-P2, fructose-2,6-bisphosphate; IgG, immunoglobulin.In several species, increased PFP activity is associated with the tissues in which a net sucrose breakdown occurs (32 and references therein). In certain tissues, like castor bean endosperm (21) and the cotyledons of Citrullus lanatus (7), however, maximum PFP activity during germination coincides with the peak in gluconeogenesis. Whether these changes in PFP activity during specific physiological conditions (6, 1 1, 17, 21, 32) are due to activation of existing enzyme or to induced gene expression is unclear.The increase in PFP activity during germination in the cotyledons of C. lanatus is due to an increase in the PFP concentration (7), presumably by increased gene expression. However, interconversion between different molecular forms, as was reported for the PFP from pea (31) and potato (20), might also contribute to changes in PFP activity. In the latter studies, it was shown that PFP can be reversibly converted from a high to a low molecular form depending on the presence of 31). The enzyme from potato...