This study introduces a flexible format for tolerogenic vaccination that incorporates IFN-β and neuroantigen (NAg) in the Alum adjuvant. Tolerogenic vaccination required all three components; IFN-β, NAg, and Alum for inhibition of experimental autoimmune encephalomyelitis (EAE) and induction of tolerance. Vaccination with “IFN-β+NAg in Alum” ameliorated NAg-specific sensitization and inhibited EAE in C57BL/6 (B6) mice in both pre-treatment and therapeutic regimens. Tolerance induction was specific for the tolerogenic vaccine antigen PLP178-191 or MOG35-55 in PLP and MOG-induced models of EAE, respectively, and was abrogated by pretreatment with a depleting anti-CD25 mAb. IFN-β/Alum-based vaccination exhibited hallmarks of infectious tolerance, because “IFN-β+OVA in Alum”-specific vaccination inhibited EAE elicited by “OVA+MOG in CFA” but not by “MOG in CFA”. “IFN-β+NAg in Alum” vaccination elicited elevated numbers and percentages of FOXP3+ T cells in blood and secondary lymphoid organs in 2D2 MOG-specific transgenic mice, and repeated boosters facilitated generation of activated CD44high CD25+ Treg populations. IFN-β and MOG35-55 elicited suppressive FOXP3+ Tregs in vitro in the absence of Alum via a mechanism that was neutralized by anti-TGF-β and that resulted in the induction of an ‘effector’ CD69+ CTLA-4+ IFNAR+ FOXP3+ Treg subset. “In vitro IFN-β+MOG-induced Tregs” inhibited EAE when transferred into actively-challenged recipients. Unlike “IFN-β+NAg in Alum” vaccines, vaccination with “TGF-β+MOG35-55 in Alum” did not elevate Treg percentages in vivo. Overall, this study indicates that “IFN-β+NAg in Alum” vaccination elicits NAg-specific, suppressive CD25+ Tregs that inhibit CNS autoimmune disease. Thus, IFN-β has the activity spectrum that drives selective responses of suppressive FOXP3+ Tregs.