The frequencies of 10 opportunistic DNA viruses were determined by multiplex real-time PCR in paired cerebrospinal fluid (CSF) and brain tissue of HIV-infected individuals. In the CSF, viruses were detectable in 45/55 cases: JC virus (JCV) in 62%, Epstein-Barr virus (EBV) in 44%, cytomegalovirus (CMV) in 25%, varicella-zoster virus (VZV) in 3.6%, herpes simplex virus 1 (HSV-1) in 1.8%, and human herpesvirus 6 (HHV-6) in 1.8% of cases. A single virus was detectable in 20 cases, 19 cases had coinfection with two viruses, and 6 cases were positive for three viruses. JCV was detectable in the CSF of 62% of cases and in 42% of brain tissues, with higher loads in progressive multifocal leukoencephalopathy (PML) (P < 0.05).
Several viruses can cause opportunistic infections in HIV-infected individuals, with high morbidity and mortality in HIVinfected individuals (1). These infections are more frequently reactivation of the latent viruses in the host. It is essential to identify the causative agent of these opportunistic infections to initiate therapy or prophylactic treatment. As the clinical pictures caused by different viruses often overlap and multiple infections are also frequent in immunocompromised hosts, simultaneous screening of a wide range of viruses would be cost-effective management (2). Viruses like Epstein-Barr virus (EBV), cytomegalovirus (CMV), and JC virus (JCV) can result in life-threatening infections in the central nervous system (CNS) of immunodeficient individuals (3, 4). The clinical conditions include primary CNS lymphoma, cytomegalovirus encephalitis, and progressive multifocal leukoencephalopathy (PML) (5-7). To compound the clinical problem, viral infections can coexist with bacterial and fungal infections. Currently, there are no reports from India on the frequency of CNS viral infections among HIV-1-infected individuals. The aim of this study was to develop a real-time multiplex PCR for the simultaneous detection of DNA viruses in paired CSF and brain tissue samples of HIV-infected individuals.The study was carried out in the Departments of Clinical Virology (site 1) and Neuropathology (site 2) of two tertiary care centers in south India. The study was approved by the institutional review boards of both institutions. Brain tissues and CSF samples of histopathologically well-characterized HIV-associated opportunistic infections collected at autopsy and archived in the Human Brain Tissue Repository of Neuropathology were utilized for the study. All the samples archived were collected at autopsy following written informed consent from the legal close relative(s) of the deceased to use the biological material for research.A total of 55 archived paired CSF and brain tissue samples collected from HIV-positive individuals who had died with confirmed bacterial or fungal infections were investigated. These diagnoses were confirmed by histopathology, immunohistochemistry, and/or microbiological methods (culture, serology). The study also included 20 CSF samples collected from patients who died of non...