The meticulously engineered powertrain mounting system of hybrid electric vehicles plays a critical role in minimizing vehicle vibrations and noise, thereby enhancing the longevity of vital powertrain components. However, developing and designing such a system demands substantial time and financial investments due to intricate analysis and modeling requirements. To tackle this challenge, this study integrates data mining technology into the design and optimization processes of the powertrain mount system. The research focuses on the powertrain mounting system of a transverse four-cylinder hybrid electric vehicle, employing the CRISP-DM (Cross-Industry Standard Process for Data Mining) methodology to establish a data-mining prediction model for mounting stiffness. This model utilizes three data mining algorithms—Multi-SVR, MRTs, and MLPR—to assess their predictive accuracy concerning mounting system stiffness estimation. A comparative analysis reveals that the MRTs algorithm outperforms others as the most effective prediction model. The proposed predictive model elucidates the quantifiable correlation between vibration isolation performance and installation stiffness, overcoming complexities associated with traditional modeling approaches. Applying this model in powertrain mounting system design showcases the efficacy of the CRISP-DM-based approach, significantly enhancing design efficiency without compromising prediction accuracy.