The Lunar Environment heliospheric X-ray Imager (LEXI) is an instrument built to image x-rays from solar wind charge exchange in Earth’s magnetosheath. Monitoring the position of the magnetopause at the inner boundary of the magnetosheath allows us to understand how magnetic reconnection regulates how energy from the solar wind is deposited into Earth’s magnetosphere. LEXI is part of an upcoming lunar lander mission set to land in Mare Crisium. To repel unwanted charged particles, the instrument carries a permanent magnet array composed of 48 neodymium magnets. The array was designed to maximize charged particle deflection while minimizing stray magnetic fields, which could impact other instruments or spacecraft operation. A Runge–Kutta-based fully kinetic particle tracing model was created to evaluate the effectiveness of LEXI’s unique charged particle deflector array. Combined with the other particle suppression measures of the instrument, including physical structures and filters, the simulations show proton and electron transmission to the LEXI detector is expected to be sufficiently reduced to allow successful imaging. The flexible simulation model can be generalized to be used in examining the magnetic deflector array effectiveness of other instruments whose signals could be compromised by unwanted charged particle contamination.