The complete nucleotide sequence for pTB6 (3,624 bp) from Bifidobacterium longum was determined. This plasmid is 95% homologous in nucleotide (nuc) sequence, and also 92% in RepB aa sequence, to rolling circle replication (RCR) plasmids pKJ36 and pB44, suggesting that pTB6 replicates by the rolling circle mechanism. The putative MembB, MobA, and protein encoding from orf (Orf) I detected were nonessential for plasmid replication. We constructed an immobile shuttle vector from pTB6 and pUC18, which transformed B. longum with a high efficiency of 2:5 Â 10 6 transformants/g DNA.Key words: Bifidobacterium longum; nucleotide sequence of pTB6; RepB and oriV; immobile plasmid; high-efficient transformation Bifidobacteria are Gram-positive anaerobic bacteria, the genome of which is GC-rich.1) These microorganisms are nonpathogenic, and constitute a major part of the normal microflora in the large intestine of humans and some other animals.2) Some Bifidobacterium species are widely used for the preparation of fermented milk products all over the world, and are believed to have health-promoting properties for their host, involving enhancement of immune response, 3) an inhibitory effect for carcinogenesis, 4) protection of the host against viral infection, 5,6) and possible production of antibacterial substances.7) Furthermore, Bifidobacterial plasmids are expected to be vectors for probiotics and for oral vaccine against infectious diseases. A recent report found that B. longum accumulated in hypoxic solid tumors after systemic administration, 8,9) and that a recombinant plasmid, pBLES100-S-eCD, carried E. coli codA fused to B. longum hup promoter, and expressed the cytosine deaminase gene (codA) of E. coli in the microorganism, 10) confirming that the recombinant B. longum is effective for enzyme-prodrug therapy.11) The plasmid vector pBLES100 consisted of pTB6 from B. longum BK51 and pBR322 from E. coli, 12) and it has been reported that the transformation efficiency of B. longum is of the order of 10,000 transformants/mg DNA.
12)Much higher efficiency of transformation, however, is desired for the cloning of foreign genes, because plasmids carrying unmodified DNA might be restricted in several species of Bifidobacteria. It is also necessary that immobile plasmids are applied to vectors to serve as a safety vehicle for gene delivery.The complete nuc sequence (3,624 bp) of pTB6 was determined (the GenBank accession number for the plasmid DNA sequence is AB187597). A database search predicted four Orfs in pTB6 (Fig. 1a), RepB (872 to 1,564), MembB (1,543 to 2,355), MobA (3,300 to 2,212) and a hypothetical protein Orf I (3,587 to 1 to 517). The GC content of this plasmid was 65.1 mol%, and the nuc sequence was 95% homologous with B. longum plasmids pKJ36 and pB44, 92% with pNAC2 and pDOJH10L (nuc position 5,308 to 8,999) and 89% with pBLO1, which belong to the RCR-type plasmid family group 1. 13) A nucleotide sequence similar to oriV was detected between nuc positions 305 and 664 (Fig. 1, b), while, IR (481 to 504) and DR...