The number of consumers seeking safe and health-beneficial foods is systematically increasing. Consumers demand more environmentally friendly and safe food options coming from organic farming. Blackcurrants fruits are a perfect source of biological active compounds, such as vitamin C, polyphenols and flavonoids as well anthocyanins. Organic agricultural practices have modified the level of bioactive compounds in blackcurrant fruits. The novelty and the aim of the presented study was to compare the concentrations of selected health-promoting antioxidants in fruits of three blackcurrants (‘Ben Adler’, ‘Tiben’ and ‘Titania’) grown in organic and conventional orchards in Poland. For bioactive compound determination, the high-performance liquid chromatography (HPLC) method was used. The obtained results showed that organic blackcurrant fruits contained significantly more vitamin C (9.4 mg/100 g f.w.), total polyphenols (189.2 mg/100 g f.w.), total phenolic acids (10.3 mg/100 g f.w.), and total flavonoids (178.8 mg/100 g f.w.), as well anthocyanins (167.9 mg/100 g f.w.), compared to conventional ones. The selected cultivars and the years of cultivation system affect the concentration of the measured polyphenols, with strong interactions between these factors. The experiment confirms the hypothesis that organic blackcurrants should be a very important part of well-balanced, healthy diet.