Boron (B) is a micronutrient for vascular plants, and B defi ciency has been recognized as a limiting factor for crop production in many areas worldwide. To gain a better insight into the adaptability mechanism of plant responses to B starvation, an Arabidopsis whole genome Affymetrix GeneChip was used to evaluate global gene expression alterations in response to short-and long-term B defi ciency stress. A large number of B defi ciency-responsive genes were identifi ed and grouped by their functions. Genes linked to jasmonic acid (JA) showed the most prominent response under B defi ciency. The transcripts for biosynthesis and regulation of JA were constantly induced during short-and long-term B defi ciency stress. A set of well-known JA-dependent process and responsive genes showed the same expression profi le. This suggested that JA could be a pivotal player in the integration of adaptive responses to B defi ciency stress. Moreover, other functional groups of B defi ciency-responsive genes (including various encoding the biosynthesis of antioxidants, the basic components of Ca 2+ signalling, protein kinases, cell wall-modifying enzymes and proteins, H + -ATPase, K + transporters, and a set of enzymes involved in central metabolism and cellular growth) were also observed, and their physiological roles under B defi ciency stress are discussed. These results provide some information for a better understanding of plant-adaptive responses to B defi ciency stress and potential strategies to improve B effi ciency in crops.