The excess application of chemical fertilizer contributes to environmental pollution. Therefore, this study aims to explore the integrated use of animal manure and chemical fertilizer to identify a more sustainable and environmentally friendly alternative to nitrogen fertilizer. Two experiments were conducted in 2018 and 2019 at Kabul University, Afghanistan, using an LD04-13265 soybean variety. The integration of animal manure and chemical fertilizer was categorized into six treatments: (1) control (no fertilizer), (2) animal manure low dose (AMLD), (3) animal manure high dose (AMHD), (4) chemical fertilizer (CF), (5) CF 50% + AMLD, and (6) CF 75% + AMLD. The results revealed that AMHD and its integration with 75% chemical fertilizer greatly influenced the vegetative growth of soybean plants in experiments I and II. The number of pods per plant and pod length significantly (p < 0.05) increased under the CF 75% + AMLD treatment. In experiment I, soybean yield increased the most with the CF treatment, followed by CF 75% + AMLD. In contrast, in experiment II, the highest yield per hectare was observed in the CF 75% + AMLD treatment, followed by CF. The CF 75% + AMLD treatment significantly increased the SPAD value in both experiments. Consequently, a strong relationship was observed between the SPAD value and yield (r = 0.74) in experiment I and between SPAD and pod length (r = 0.82) in experiment II. Incorporating animal manure with chemical fertilizer significantly impacted soybean growth and yield, offering a potential possibility for reducing reliance on nitrogen fertilizer application to mitigate environmental pollution.