Although wild Yangtze Eriocheir sinensis juveniles (coin‐sized seed) have better culture performance than the pond‐reared juveniles during the adult crab culture stage, the culture performance of wild‐caught megalopae (WC) remains unknown. Therefore, this study was designed to compare the growth, survival rate, crab yield, feed conversion rate (FCR), precocity, final weight and size distribution between WC and hatchery‐produced megalopae (HP) during the juvenile culture stage. Wild‐caught megalopae had significantly higher body weight, weight gain rate (WGR) and specific growth rate (SGR) during 0–4 weeks but lower WGR and SGR than HP during 4–8 weeks (p < .05). Although WC had a significantly lower survival rate and yield of normal juvenile crabs than HP, total yields of normal juveniles and precocious crabs were similar. Wild‐caught megalopae had a significantly higher precocious rate and yield of precocious crabs than HP (p < .05). Regardless of sex, no significant differences were found in the gonadosomatic index (GSI), hepatosomatic index (HSI) and final weight of normal juveniles and precocious crabs between WC and HP. As for the size distribution of normal crabs, WC had a higher percentage of small female juveniles (<3 g) but a lower proportion of middle size ranges (3–5.99 g and 6–8.99 g) than HP for females (p < .05), and there was no significant difference for males. In conclusion, wild megalopae of the Yangtze E. sinensis had worse culture performance than the hatchery‐produced seeds; therefore, wild megalopae would not be recommended for commercially juvenile culture of E. sinensis.