Background: Soy iso avone and soy saponin are heat-stable glycosides present in soybean meal, which is the major factor restrict soy protein using in aquatic feed. This study is aimed to conduct that dietary soy iso avone and soy saponin on growth performance, intestinal structure, intestinal immunity and gut microbiota community on rice eld eel (Monopterus albus), and revealed its mechanism. Results: In current study, dietary 1g/kg soy iso avone, 2g/kg soy saponin and their mixed feed decreased growth of M. albus. Dietary 1g/kg soy iso avone signi cantly increased serum alkaline phosphatase (P < 0.05), dietary 2g/kg soy saponin remarkably declined intestinal immunoglobulin M (P < 0.05). Dietary 1g/kg soy iso avone and 2g/kg soy saponin mixed feed signi cantly decreased intestinal complement 3, complement 4 and immunoglobulin M, amounts of intestinal goblet cells per root and shannon of gut microbiota (P < 0.05). Dietary 1g/kg soy iso avone, 2g/kg soy saponin and their mixed feed down regulated intestinal tight junction protein (Interleukin-12, Interleukin-15, Tight junction protein ZO-2-like) and anti-in ammatory (Interleukin-10, Transforming growth factor beta 2) mRNA expression, up regulated pri-in ammatory factors (Interleukin-1 β, Interleukin-6, Interleukin-8, Interleukin-12 and Interleukin-15) mRNA expression. Conclusion: Based on the current results, dietary soy iso avone and soy saponin could damage the intestinal structure and changes gut bacteria community of M. albus, and destroyed the intestinal barrier, eventually induced intestinal in ammatory occurring, soy iso avone and soy saponin mixed feed has more serious effect than they single supplemented.