Meltwater discharge from the Greenland Ice Sheet (GrIS) exports sediment, solutes, total phosphorus (TP), dissolved inorganic nitrogen (DIN), and other macro-and micronutrients to associated aquatic ecosystems. It remains unclear how this meltwater affects the ecology of glacially fed (GF) lakes. We assessed a suite of physical, chemical, and biological features of four GF lakes, and compared them to those of four nearby snow-and groundwater-fed (SF) lakes. We found that TP concentrations were six times higher in GF compared to SF lakes, but microbial extracellular enzyme activities and aluminum, iron, and phosphorus sediment fractions suggested that much of this TP in GF lakes is likely not biologically available. Turbidity was fifteen times higher in GF lakes, and DIN was twice as high than in SF lakes, but these nitrogen differences were not significant. While diatom species richness did not significantly differ between lake types, GF lakes had higher water column chlorophyll a (Chl a). Diatom species distributions across all lakes were strongly associated with turbidity, TP, and dissolved organic carbon (DOC). While cosmopolitan diatom taxa such as Discostella stelligera were found in both lake types, diatom communities differed across lake types. For instance, Fragilaria and Psammothidium species dominated GF lakes, while Achnanthes species and Lindavia ocellata were dominant in SF lakes. In addition to turbidity, the moderate amounts of DIN in GF lakes may play an important role in shaping diatom communities. This is supported by the high abundance in GF lakes of taxa such as Fragilaria tenera and D. stelligera, which reflect nitrogen enrichment in some lakes. Our results demonstrate how GrIS meltwaters alter the ecology of Arctic lakes, and contribute to the growing body of literature that reveals spatial variability in the effects of glacial meltwaters on lake ecosystems.