To clarify the relationship between irreversible inactivation and intracellular protein denaturation of Saccharomyces pastorianus by low-pressure carbon dioxide microbubbles (CO 2 MB) treatment, a storage test of S. pastorianus cells treated with CO 2 MB was performed, and the effect on the intracellular protein was investigated. In the storage test, the S. pastorianus population, which decreased below the detection limit by CO 2 MB treatment at a temperature of 45 and 50 C (MB45 and MB50), and thermal treatment at a temperature of 80 C (T80), remained undetectable during storage for 3 weeks at 25 C. However, 4.1 and 1.3-logs of the S. pastorianus populations, which survived after CO 2 MB treatment at temperatures of 35 and 40 C (MB35 and MB40), increased gradually during storage for 3 weeks at 25 C. Insolubilization of intracellular proteins in S. pastorianus increased with increasing the temperature of CO 2 MB treatment. Activity of glyceraldehyde-3-phosphate dehydrogenase (GAPDH) identified asone of the insolubilized proteins increased at MB35 and MB40 than non-treatment but disappeared at MB45 and MB50, and T80. Therefore, it was revealed that S. pastorianus cells inactivated below the detection level by CO 2 MB treatment did not regrow and that the denaturation of intracellular proteins of S. pastorianus was caused by CO 2 MB and thermal treatments. Furthermore, it was suggested that denaturation of intracellular vital enzymes was an important factor for achieving irreversible inactivation of S. pastorianus by CO 2 MB and thermal treatments.