Background: Weather extremes are predicted to influence pathogen exposure but their effects on specific fecal-oral transmission pathways are not well investigated. We evaluated effects of extreme rain and temperature during different antecedent periods (0-14 days) on E. coli along eight fecal-oral transmission pathways in rural Bangladeshi households. Methods: E. coli was enumerated in mother and child hand rinses, food, stored drinking water, tubewells, flies, ponds, and courtyard soil using IDEXX Quanti-Tray/2000 in nine rounds over 3.5 years (n=26,659 samples) and spatiotemporally matched to daily weather data. We used generalized linear models with robust standard errors to estimate E. coli count ratios (ECRs) associated with extreme rain and temperature, defined as >90th percentile of daily values during the study period. Findings: Controlling for temperature, extreme rain on the sampling day was associated with increased E. coli in food (ECR=3.13 (1.63, 5.99), p=0.001), stored drinking water (ECR=1.98 (1.36, 2.88), p<0.0005) and ponds (ECR=3.46 (2.34, 5.11), p<0.0005), and reduced E. coli in soil (ECR=0.36 (0.24, 0.53), p<0.0005). Extreme rain the day before sampling was associated with reduced E. coli in tubewells (ECR=0.10 (0.02, 0.62), p=0.014). Effects were similar for rainfall 1-7 days before sampling and slightly attenuated for rainfall 14 days before sampling. Controlling for rainfall, extreme temperature on the sampling day was associated increased E. coli in stored drinking water (ECR=1.49 (1.05, 2.12), p=0.025) and food (ECR=3.01 (1.51, 6.01), p=0.002). Rainfall/temperature was not consistently associated with E. coli on hands and flies. Interpretation: In rural Bangladesh, measures to control enteric infections following weather extremes should focus on reducing contamination of drinking water and food stored at home and reducing exposure to surface waters. Funding: Bill & Melinda Gates Foundation, National Institutes of Health, World Bank.