The role of pelagic cladoceran communities is discussed on the basis of a comparative study conducted in two Estonian lakes, the moderately eutrophic Lake Peipsi (N tot 700, P tot 40 lg l -1 as average of ice-free period of [1997][1998][1999][2000][2001][2002][2003] and in a strongly eutrophic Lake Võ rtsjä rv (N tot 1600, P tot 54 lg l -1 ). The cladoceran community was found to reflect the differences in the trophic state of these lakes. In L. Peipsi, characteristic species of oligo-mesotrophic and eutrophic waters co-dominated (making up 20% or more of total zooplankton abundance or biomass), whereas in L. Võ rtsjä rv only species of eutrophic waters occurred. In L. Peipsi, the dominant cladocerans were Bosmina berolinensis and Daphnia galeata, while Chydorus sphaericus was the most abundant cladoceran in L. Võ rtsjä rv. The cladocerans of L. Peipsi (mean individual wet weight 25 lg) were significantly (threefold) larger than those of L. Võ rtsjä rv (8 lg). The mean wet biomass of cladocerans was higher and total cladoceran abundance was lower in L. Peipsi compared to L. Võ rtsjä rv (biomass varied from 0.133 to 1.570 g m -3 ; mean value 0.800 g m -3 in L. Peipsi and from 0.201 to 0.706 g m -3 , mean 0.400 g m -3 in L. Võ rtsjä rv; the corresponding data for abundances were: 8,000-43,000 ind m -3 , mean 30,000 ind m -3 for L. Peipsi, 50,000-100,000, mean 52,000 ind m -3 for L. Võ rtsjä rv). Based upon differences in body size, cladocerans were more effective transporters of energy in L. Peipsi than in L. Võ rtsjä rv. Cladocerans proved to be informative indicators of the trophic status and of the efficiency of the food web in studied lakes.