2015
DOI: 10.1021/acs.jpcb.5b03970
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Effects of Natural Osmolytes on the Protein Structure in Supercritical CO2: Molecular Level Evidence

Abstract: Protein instability in supercritical CO2 limits the application of this green solvent in enzyme-catalyzed reactions. CO2 molecules act as a protein denaturant at high pressure under supercritical conditions. Here, for the first time, we show that natural osmolytes could stabilize protein conformation in supercritical CO2. Molecular dynamics simulation is used to monitor the effects of adding different natural osmolytes on the conformation and dynamics of chymotrypsin inhibitor 2 (CI2) in supercritical CO2. Sim… Show more

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Cited by 43 publications
(5 citation statements)
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“…Also, the RMSD can be used for monitoring the equilibrium processes of the system and the stability of protein structure upon the binding of a small ligand [23] . In general, RMSD in MD simulation represents a means to assess conformational deviation from the initial protein structure [24] . Furthermore, the RMSD could be used to compare the stability of protein structure considering the absence and presence of a ligand.…”
Section: Resultsmentioning
confidence: 99%
“…Also, the RMSD can be used for monitoring the equilibrium processes of the system and the stability of protein structure upon the binding of a small ligand [23] . In general, RMSD in MD simulation represents a means to assess conformational deviation from the initial protein structure [24] . Furthermore, the RMSD could be used to compare the stability of protein structure considering the absence and presence of a ligand.…”
Section: Resultsmentioning
confidence: 99%
“…The docked EGuia-cellotetraose structure was used in the MD simulation. Root mean square deviation (RMSD) is used to evaluate structural deviations from the initial protein structure (i.e., to estimate the protein intactness) [16]. The stability of the protein relative to its conformation can be determined by the deviations produced during the course of its simulation.…”
Section: Resultsmentioning
confidence: 99%
“…S4, see the "Supplementary information" for details). During analysis of the obtained proteomic data, one should be aware that because the SH were obtained via SC-CO 2 extraction, various protein modifications might have been introduced [79,80]. Therefore, straightforward identification or annotation of identified proteins may lead to false positive hits, despite the high Mascot or Sequest HT score and sequence coverage.…”
Section: Electrophoretic (Sds-page) Analysismentioning
confidence: 99%