Increasing planting density is one of the most effective ways to increase soybean yield, but supra-optimum density leads to an increase in the risk of lodged soybean. In this study, two varieties were selected. Heinong84 (lodging-susceptible variety, HN84) had planting densities of 200,000 plants/hm2, 300,000 plants/hm2, and 400,000 plants/hm2. Henong60 (lodging-resistant, HN60) had planting densities of 300,000 plants/hm2, 400,000 plants/hm2, and 500,000 plants/hm2. When the foliar application of uniconazole (50 mg/L) occurred at the beginning of the flowering stage (R1), the plant morphology, fiber composition, and mechanical properties of soybean internodes were determined at the podding and seed filling stages, and the yield was measured at the harvest stage. The results showed that spraying uniconazole at the R1 stage changed the morphology structure of soybean plants (i.e., plant height and petiole length reduction; stem diameter and leafstalk angle increase), improved the internode quality (i.e., increased breaking force, lignin content, cellulose content, hemicellulose content, and stem dry weight per unit length), and increased the number of grains per plant at the harvest stage. Thus, it is concluded that the application of uniconazole improved the plant population structure by changing the morphology of soybean plants, which was conducive to good light transmission and ventilation, improved the internode quality and lodging resistance, and increased the yield.