Neuroblastoma is a pediatric tumor of the sympathetic nervous system. MYCN (V-myc myelocytomatosis viral-related oncogene, neuroblastoma derived [avian]) is amplified in 20% of neuroblastomas, and these tumors carry a poor prognosis. However, tumors without MYCN amplification also may have a poor outcome. Here, we identified downstream targets of MYCN by shRNA-mediated silencing MYCN in neuroblastoma cells. From these targets, 157 genes showed an expression profile correlating with MYCN mRNA levels in NB88, a series of 88 neuroblastoma tumors, and therefore represent in vivo relevant MYCN pathway genes. This 157-gene signature identified very poor prognosis tumors in NB88 and independent neuroblastoma cohorts and was more powerful than MYCN amplification or MYCN expression alone. Remarkably, this signature also identified poor outcome of a group of tumors without MYCN amplification. Most of these tumors have low MYCN mRNA levels but high nuclear MYCN protein levels, suggesting stabilization of MYCN at the protein level. One tumor has an MYC amplification and high MYC expression. Chip-on-chip analyses showed that most genes in this signature are directly regulated by MYCN. MYCN induces genes functioning in cell cycle and DNA repair while repressing neuronal differentiation genes. The functional MYCN-157 signature recognizes classical neuroblastoma with MYCN amplification, as well as a newly identified group marked by MYCN protein stabilization. N euroblastoma is a pediatric solid tumor derived from the sympathetic nervous system. The prognosis is highly variable and is associated with parameters such as age at diagnosis, dissemination at time of diagnosis, tumor stage, and grade of differentiation of the primary tumor (1). Neuroblastoma stages 1 and 2 have a very good prognosis, but survival in stage 4 neuroblastoma is below 30%. Amplification of MYCN (V-myc myelocytomatosis viral-related oncogene, neuroblastoma derived [avian]) is associated with poor outcome. It occurs in about 20% of the tumors but is confined to high-stage neuroblastoma.Together with MYC and MYCL, MYCN belongs to the MYC transcription factor family, whose role in cancer has been studied extensively. A series of investigators have manipulated MYCN expression in neuroblastoma cell lines by overexpression or silencing. High expression of MYCN is associated with fast proliferation and induction of cell cycle genes [(2-5) and reviewed by Bell (5)]. Although cell cycle genes were identified, the actual number of MYC-regulated genes is a small minority compared with all other genes claimed to be regulated in such experiments. In fact, thousands of candidate target genes of MYC and/or MYCN currently are known, which has complicated pinpointing of the relevant set of genes regulated by MYC genes and responsible for the aggressive phenotype.In a very early study, MYCN protein expression was found to be a poor prognostic factor (6). Recent experiments in cell lines showed that MYCN protein stability is decreased after phosphorylation by glycogen synthas...