Logging operations using heavy machinery effect changes in soil characteristics due to compaction; such conditions can negatively influence seedling development. In stands managed on the basis of close‐to‐nature silviculture or continuous cover forestry, successful establishment of natural regeneration after logging is important to ensure the proper functioning of a forest ecosystem, to promote soil recovery, and to prevent and mitigate land degradation processes (such as soil erosion, mudflow, waterlogging, and landslides) related to soil compaction and rutting. This work aimed to assess the early response of Quercus robur seedlings to soil compaction during the first 1.5 months after germination. The study was carried out in a controlled environment using 8 L containers filled with natural alluvial soil. Three levels of soil compaction were applied in a laboratory using a compression‐testing machine placed on the top surface of the soil in the containers. The morphological traits of the seedling shoot and root systems were analysed to compare 3 compaction levels. There were significant differences in seedling traits among the treatments, and they indicated that increasing levels of compaction reduced early seedling growth after emergence. Compaction had a larger impact on the root system, particularly the development at depth (root system depth, and main root length), compared with the shoot system. Our results suggest that compaction affects seedling root system growth following the first growth stages after germination; thus, compaction represents an additional critical factor for seedling establishment, particularly in environments where early growth is crucial for overcoming the dry season.