This study aimed to clarify the physiological effects of touching hinoki cypress (hereinafter called "hinoki") (Chamaecyparis obtusa) wood with the palm of the right hand on brain activity and autonomic nervous activity. Twenty-two female university students (mean age 21.1 ± 0.2 years) participated in the study. As an indicator of brain activity, oxyhemoglobin (oxy-Hb) concentrations were measured in the left/right prefrontal cortex using near-infrared time-resolved spectroscopy. Heart rate variability (HRV) was used as an indicator of autonomic nervous activity. The high-frequency (HF) component of HRV, which reflected parasympathetic nervous activity, and the low-frequency (LF)/HF ratio, which reflected sympathetic nervous activity, were measured. Plate (300 × 300 mm) of uncoated hinoki was used as tactile stimulation. Marble was used as a control material. After sitting at rest with their eyes closed, the participants touched the materials for 90 s with their eyes still closed. The results showed that tactile stimulation with hinoki significantly decreased oxy-Hb concentration in the left prefrontal cortex and increased ln(HF) reflected parasympathetic nervous activity compared with marble. In conclusion, our study showed that touching hinoki wood with the palm calms prefrontal cortex activity and increases parasympathetic nervous activity, thereby inducing physiological relaxation.