The sealing of the rotor-rotor gap and rotor disk cooling are vital to the safe operation of the vaneless counter-rotating turbine(VCRT). In order to quantifies the influence of the wheel-space cavity flow on the VCRT aerodynamic performance, and to improve turbine efficiency of the VCRT at certain rim seal ejection rates, numerical studies which considered the effects of rotor-rotor rim seal flow ejection are carried out in this paper. The three dimensional unsteady computational fluid dynamic analysis of a VCRT at the engine conditions are performed, and the seal flow ejected downstream of the high pressure rotor row at six sealing flow rate are modeled. The interaction among the high pressure rotor trailing shock wave, the downstream secondary flow and the seal flow has been studied and quantitatively characterized as a function of the purge ejection rate. Numerical results show that seal flow- mainstream flow interaction is entirely dominated by the high pressure rotor trailing edge shock at the hub, low pressure hub passage vortex and the mixing of the sealing flow from wheelspace and mainstream. When the mass flow rate of the coolant is smaller than some threshold value, the shock loss of the high pressure rotor and hub secondary flow loss of the low pressure rotor are decreased with the increasing of the coolant mass flow rate. It causes that the VCRT efficiency is gradually increased. On condition that the amount of the seal flows is beyond the threshold value, the key roles in modification of the VCRT performance are changed. The increment of the hub secondary flow loss and the mixing loss are gradually larger than the decrement of the shock loss. As a result, the turbine efficiency gradually decreases.