Sustainable development is one of the main directions of modern agriculture. First of all, sustainability in the agricultural sector can be achieved through the possible abandonment of traditional mineral fertilizers. Many decades of using these fertilizers have led to the degradation of arable soils and to soil and environmental pollution. As a result, this causes reductions in yields and the environmental quality of agricultural products and affects the health of the population. An alternative to traditional mineral fertilizers may be the use of innovative organomineral fertilizers obtained from local resources. These include manure, humus, compost, sediments, etc. In recent years, fertilizers obtained from the sapropels of the bottom sediments of lakes have become widespread. Their distinctive feature is the environmental friendliness and completeness of the content of chemical elements and substances necessary for the development and growth of plants. In addition, the methods of obtaining and applying these fertilizers allow us to talk about their effectiveness in use. The range of applications of these fertilizers is diverse, from use in the form of a dry extract applied directly to the soil to the use of liquid suspensions used at various stages of processing and from pre-sowing seed treatment to watering and spraying plants at different periods of vegetation. Moreover, an important aspect is the research work on the variational use of sapropel fertilizers on different crops, with different methods of production and concentrations and at different stages of processing. This publication contains the results of a study of the effect of the obtained innovative sapropel fertilizer on productivity, wheat grain quality, and economic efficiency (Triticum aestivum L.). To identify the optimal concentration of sapropel extract, laboratory studies were carried out to determine the germination energy and germination of wheat seeds of different varieties when they were soaked in various concentrations: 0.4, 0.8, 1.2, 1.6, and 2.0 g/L. The best indicators of germination energy and germination of wheat seeds during treatment with the extract were obtained at a concentration of 1.2 g/L. The research was conducted at an accredited variety testing laboratory. A field experiment was conducted in the fields of the agrobiological station of North Kazakhstan University named after Manash Kozybayev. The treatment of the seeds was carried out by soaking them in sapropel extract to evenly distribute the substance. The scheme of the field experiment included the option of using foliar treatment with a solution of sapropel extract at the tillering stage. As a result of the application of the obtained extract in the field, environmental and socio-economic efficiency was noted. The conducted field studies note its positive effect and effectiveness on the morphological, qualitative, and quantitative indicators of the wheat harvest. In the areas where wheat seeds were pretreated, as well as where foliar treatment with the resulting sapropel suspension was carried out, the best yield indicators were revealed. In these variants of the experiment with pre-sowing and pre-sowing and foliar treatment with the sapropel extract solution, the yield was 3.63 and 3.81 tons per hectare, respectively. The introduction of sapropel extract at the stage of seed treatment before sowing, as well as foliar processing of wheat at the tillering stage, will increase the efficiency and profitability of the agricultural industry and obtain a synergistic effect in the form of socio-economic efficiency and environmental safety of production. In our opinion, this will contribute to the development of sustainable agriculture and the production of environmental products.