20Background: Rhodosporidium toruloides is a basidiomycetes yeast that can accumulate large 21 amount of lipids and natively produce carotenoids. To better assess this non-model yeast's 22 metabolic capabilities, we reconstruct a genome-scale model of R. toruloides IFO0880's metabolic 23 network (iRhto1108) using recent functional genomics and phenotypic data in literature or 24 generated herein. 25 Results: The model iRhto1108 accounts for 2,203 reactions, 1,985 metabolites and 1,108 genes. 26In this work, we integrate and supplement the current knowledge with in-house generated biomass 27 composition and experimental measurements pertaining to the organism's metabolic capabilities. 28 Phenotype-genotype relationship predictions were improved through manual curation of gene-29 protein-reaction rules for 543 reactions and validations with gene essentiality data leading to 30 correct recapitulations of 84.5% of gene essentiality data (sensitivity of 94.3% and specificity of 31 53.8%). Organism-specific macromolecular composition and ATP maintenance requirements 32 were experimentally measured for two separate growth conditions: (i) carbon and (ii) nitrogen 1 limitations. Overall, iRhto1108 reproduced R. toruloides's utilization capabilities for 18 alternate 2 substrates, matched measured wild-type growth yield, and recapitulated the viability of 772 out of 3 819 deletion mutants. As a demonstration to the model's fidelity in guiding engineering 4 interventions, the OptForce procedure was applied on iRhto1108 for the overproduction of 5 triacylglycerol. Suggested interventions recapitulated many of the previously successfully 6 implemented genetic modifications and put forth a few new ones. 7 Conclusion: iRhto1108 offers a highly curated model for a non-model yeast supported by multiple 8 layers of experimental data that can be used to inform genetic interventions. 9 Keywords: Genome-scale model, Non-model yeast, Rhodosporidium toruloides, Triacylglycerol 10 production 11 12 Background 13 Rhodotorula genus species are found in various habitats including soil, water, air, on animals and 14 plants, and even in extreme environments such as arctic ice sheets [1]. Among them, 15 Rhodosporidium toruloides (or Rhodotorula toruloides) is a basidiomycete yeast generally found 16 in soil [2] containing carotenoid compounds giving the organism its characteristic pink color [3, 17 4]. R. toruloides is an attractive metabolic engineering host for producing lipid and fatty acid-18 derived products due to its ability to accumulate lipid (predominantly triacylglycerols [5]) as high 19 as 76% of the cell dry weight [6] and maintain lipid production in biomass hydrolysate containing 20 growth inhibitory compounds [7]. It can also grow in high density cell cultures [8] and utilize a 21 wide variety of substrates and glucose-xylose mixtures without catabolic repression [9, 10]. It has 22 a rather compact genome (i.e., haploid genome of 20 Mb with 20% being intergenic sequence) that 23 34] for which five genome-scale models of iterativ...