Synthetic organic dye pollutants pose a serious threat to the aquatic ecological environment due to their difficulty in complete degradation. This study employed a plasma bubble array reactor to degrade individual and mixed dye pollutant solutions of Sunset Yellow (SY), Methyl Orange (MO), and Methyl Violet (MV). The degradation efficiencies and mechanisms of the plasma were investigated under different working gas atmospheres. It was found that oxygen plasma degraded the target dyes and their mixtures more significantly than air plasma. Specifically, compared with air plasma, the removal of single dyes SY, MO and MV by oxygen plasma was increased by 76.6%, 13.8% and 3%, respectively, after 20 min of treatment. As for mixed dyes, after 25 min treatment, oxygen plasma removed 99.1%, which was 31.6% higher than air plasma. However, the degradation kinetic order in oxygen plasma was SY > MO > MV, while that in air plasma was MV > MO > SY. Combined with the detection of reactive oxygen-nitrogen species (RONS), the results showed that the reactive oxygen species (ROS) played an important role in the degradation of SY, and it was also important for the degradation of MO, whereas both the ROS and reactive nitrogen species (RNS) were important for the degradation of MV. Scavenger experiments revealed that hydroxyl (·OH) and superoxide anion (·O2-) played the most important roles in the degradation process. The three dyes were basically completely degraded within 14-20 minutes of treatment, with corresponding yields of 1.94-2.79 g/kWh. Possible degradation pathways for each dye were deduced based on LC-MS and the toxicities of solutions were evaluated by phytotoxicity tests and ion chromatography. The results showed that the biotoxicity of the intermediates was significantly reduced. This study may provide a feasible option for effective application of plasma technology in organic dye wastewater treatment.